species:   Rhsol
pid:       PID0462
parent:    Rhi-milR-136
paralog:   
locus:     KB317696.1:2178060-2178149
matures:   ['UGGAAGCAGGUAUUGGAUGAUG', 'UUGCUGGUAUUUGCUCUCAUU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317696.1:2178060-2178149

4 out of bounds
35 alignments
34 proper strand
34 stranded perfect matches

        *************************   ************************                              
AUGAGCUACAUGGAAGCAGGUAUUGGAUGAUGGUUUACAUUGCUGGUAUUUGCUCUCAUUCCCAAAAAACCCAUAGAUUGGGUGGCCUUU
....(((..((((.((((((((((((.(((((.....))))))))))))))))).)))).........(((((.....))))))))....
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=5 c
---------------------------------------UUGCUGGUAUUUGCUCUCAUU------------------------------ l=21 a=0 c*
----------UGGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=23 a=21 ma
--------------------------------------AUUGCUGGUAUUUGCUCUCAUU------------------------------ l=22 a=0 ma*

--------CAUGGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=25 a=3 
---------AUGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=23 a=1 
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=5 (c)
----------UGGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=23 a=21 (ma)
----------UGGAAGCAGGUAUUGGAUGAUGGU-------------------------------------------------------- l=24 a=4 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
